PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g15040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 481aa    MW: 53344.9 Da    PI: 9.5296
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g15040genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-056587123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  CA10g15040 65 FICEICNKGFQRDQNLQLHRRGH 87
                89*******************88 PP

2zf-C2H212.80.00035142164123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  CA10g15040 142 WKCEKCSKKYAVQSDWKAHSKTC 164
                 58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.02E-76487No hitNo description
Gene3DG3DSA:3.30.160.601.3E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.7E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456587IPR007087Zinc finger, C2H2
SMARTSM003550.0226587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355110107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-7137162No hitNo description
SMARTSM00355140142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MMSGDVFSFP SSVKAVLPHH QELQTNPNPK PNPSTKKRRN LPGTPDPDAE VIALSPKSLM  60
ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKLE QVKKKVYICP EKTCIHHDPS  120
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  180
DSFITHRAFC DALAEESSRI TSVGTNNLIN FPNNATLLNQ QANLHGGFTG FRPDYGYPQQ  240
QKPRLSLWLD QQAPNHNNHL QISSSSNLFD SSNTTGFQEM IQMQSQNHVF GGSNSTTSNF  300
SLSSPVQGNS IADQSLNSLY SDSQNSHQLT KANSTPLPMS ATALLQKAAQ MGSTKSNPTT  360
TFFTNNFNKL NSSSSSSSPT TPTFIGLQSI DQTTDQLFTQ KSEDYTTSLL QCNNGLMQSV  420
GMQNNPAISM NMEQGINGLA NCLTRDFLGI KHEGNCQFLP QEIVKFASLS NSAMGLSHLQ  480
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543347.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D21e-127IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLK4D3K40.0K4D3K4_SOLLC; Uncharacterized protein
STRINGSolyc10g084180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-97C2H2-like zinc finger protein